Reading through the User Manual online here, I thought I saw that it was possible to create certain On-Board Presets with TrackIR turned off. I would like to be able to have some presets with it on, and some with it off but I cannot see how this can be achieved. The only TrackIR setting I can find is in the Advanced tab of the Camera settings, with looks to control a Global setting for the Preset type (On-Board, or Outside).

Figured it out, yes it was possible and rather easy. I found an easy way to do this was to first create my cockpit presets and then select the Camera -> Advanced tab for the first preset in my list. From the General Options section I would toggle on/off the TrackIR setting while cycling through all my presets using the Next Preset control assignment. The application remembers the TrackIR setting for each Preset, so I am able to have some with TrackIR on and others with it off.