Hey all I have my goflight TQ6 setup and working fine save for one small issue. For some reason I can't get the flaps to go all the way down and in the case of the Igex 737 all the way up aswell(they stay at 1 till I click them up) I've calibrated the controls but it didn't fix anything.

That´s a well known problem. At the moment settings like Flaps don´t have a Nullzone, so it normally you can´t assign an axis to such values. I haven´t checked in the current beta, but as far as I know this bug is still open.